Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs61888887 | chr11:57099051 | G/T | 2.14E-11 | 489 | 16.3 | 14.47 | 20.77 | KM Plot |
| THCA | rs61888888 | chr11:57103684 | A/G | 3.82E-11 | 483 | 16.23 | 14.47 | 20.77 | KM Plot |
| THCA | rs61899398 | chr11:3894205 | A/G | 5.74E-6 | 474 | 12.97 | 16.2 | 16.8 | KM Plot |
| THCA | rs61903663 | chr11:117133242 | T/C | 8.96E-6 | 481 | 15.23 | 18.77 | 25.47 | KM Plot |
| THCA | rs61935541 | chr12:109510766 | A/G | 2.39E-7 | 471 | 16.02 | 16.83 | 6.17 | KM Plot |
| THCA | rs61969229 | chr13:111244673 | G/A | 1.33E-5 | 467 | 14.93 | 18.53 | 9.78 | KM Plot |
| THCA | rs61969233 | chr13:111248397 | T/C | 0.000278 | 481 | 15.2 | 18.38 | 14.7 | KM Plot |
| THCA | rs61984460 | chr14:59764524 | T/C | 1.4E-8 | 488 | 16.38 | 12.62 | 5.45 | KM Plot |
| THCA | rs61984461 | chr14:59764529 | A/G | 1.4E-8 | 488 | 16.38 | 12.62 | 5.45 | KM Plot |
| THCA | rs61984462 | chr14:59769760 | C/T | 1.38E-8 | 487 | 16.37 | 14.1 | 5.45 | KM Plot |
| THCA | rs61984463 | chr14:59771730 | A/G | 1.4E-8 | 487 | 16.38 | 12.7 | 5.45 | KM Plot |
| THCA | rs61984464 | chr14:59773180 | T/C | 1.42E-8 | 486 | 16.33 | 14.1 | 5.45 | KM Plot |
| THCA | rs61984489 | chr14:59781468 | A/G | 1.61E-8 | 485 | 16.37 | 13.1 | 5.45 | KM Plot |
| THCA | rs61984493 | chr14:59785916 | G/C | 1.6E-8 | 486 | 16.37 | 12.7 | 5.45 | KM Plot |
| THCA | rs61984494 | chr14:59790624 | C/T | 1.38E-8 | 487 | 16.37 | 14.1 | 5.45 | KM Plot |